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    LOC100366318 splicing factor 45-like [ Saccoglossus kowalevskii ]

    Gene ID: 100366318, updated on 19-Oct-2023

    Summary

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    Gene symbol
    LOC100366318
    Gene description
    splicing factor 45-like
    See related
    EnsemblRapid:LOC100366318
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Saccoglossus kowalevskii
    Lineage
    Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
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    Genomic context

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    See LOC100366318 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Skow_1.1 (GCF_000003605.2) Unplaced Scaffold NW_003139320.1 (111758..132608, complement)

    NW_003139320.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 8B-A-like Neighboring gene dipeptidyl peptidase 1-like Neighboring gene ribonuclease P protein subunit p14-like Neighboring gene cyclin-related protein FAM58A-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003139320 unplaced scaffold reference Skow_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 45-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Saccoglossus kowalevskii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Skow_1.1 Primary Assembly

    Genomic

    1. NW_003139320.1 Reference Skow_1.1 Primary Assembly

      Range
      111758..132608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006820640.1 → XP_006820703.1  splicing factor 45-like

      See identical proteins and their annotated locations for XP_006820703.1

      Related
      XP_006820703.1, XM_006820640.1
      Conserved Domains (2) summary
      cd12647
      Location:422 → 516
      RRM_UHM_SPF45; RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
      pfam01585
      Location:336 → 375
      G-patch; G-patch domain

    2. XM_002738131.2 → XP_002738177.1  splicing factor 45-like

      See identical proteins and their annotated locations for XP_002738177.1

      Related
      XP_002738177.1, XM_002738131.2
      Conserved Domains (2) summary
      cd12647
      Location:422 → 516
      RRM_UHM_SPF45; RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
      pfam01585
      Location:336 → 375
      G-patch; G-patch domain
    Nucleotide Protein
    Heading Accession and Version

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