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    Afadin/alpha-actinin-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816403, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Afadin/alpha-actinin-binding protein
    Primary source
    TAIR:AT2G18876
    Locus tag
    AT2G18876
    See related
    Araport:AT2G18876
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Encodes a microtubule-associated protein.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (8169546..8172523)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene vernalization5/VIN3-like protein Neighboring gene vernalization5/VIN3-like protein Neighboring gene Protein kinase superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_179650.1
    NM_179651.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of microtubule associated complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Afadin/alpha-actinin-binding protein
    NP_849981.1
    • Afadin/alpha-actinin-binding protein; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT5G57410.3); Has 6400 Blast hits to 5312 proteins in 498 species: Archae - 42; Bacteria - 460; Metazoa - 3301; Fungi - 542; Plants - 222; Viruses - 9; Other Eukaryotes - 1824 (source: NCBI BLink).
    NP_849982.1
    • Afadin/alpha-actinin-binding protein; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT5G57410.2); Has 2181 Blast hits to 1953 proteins in 285 species: Archae - 6; Bacteria - 183; Metazoa - 1166; Fungi - 140; Plants - 107; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8169546..8172523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179651.2 → NP_849982.1  Afadin/alpha-actinin-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849982.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZZ1, A0A7G2ED65, Q8GUK2
      Conserved Domains (1) summary
      cl23720
      Location:1 → 84
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    2. NM_179650.1 → NP_849981.1  Afadin/alpha-actinin-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849981.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EU16, Q8GW47
      Conserved Domains (1) summary
      pfam11559
      Location:35 → 182
      ADIP; Afadin- and alpha -actinin-Binding
    Nucleotide Protein
    Heading Accession and Version

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