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    MFS40622_RS04820 PIP-CTERM sorting domain-containing protein [ Methanocaldococcus sp. FS406-22 ]

    Gene ID: 8804811, updated on 22-Oct-2024

    Summary

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    Gene symbol
    MFS40622_RS04820
    Gene description
    PIP-CTERM sorting domain-containing protein
    Locus tag
    MFS40622_RS04820
    Gene type
    protein coding
    Organism
    Methanocaldococcus sp. FS406-22 (strain: FS406-22)
    Lineage
    Archaea; Methanobacteriati; Methanobacteriota; Methanomada group; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus
    Old locus tag
    MFS40622_0966
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    Genomic context

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    Sequence:
    NC_013887.1 (959751..962771)

    NC_013887.1Genomic Context describing neighboring genes Neighboring gene class III signal peptide-containing protein Neighboring gene hypothetical protein Neighboring gene class III signal peptide domain-containing protein, archaeosortase D/PIP-CTERM system-associated Neighboring gene DUF2341 domain-containing protein Neighboring gene archaeosortase D Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013887.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification. Haft DH, et al. J Bacteriol, 2012 Jan. PMID 22037399, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    PIP-CTERM sorting domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013887.1 Reference assembly

      Range
      959751..962771
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_012980555.1 PIP-CTERM sorting domain-containing protein [Methanocaldococcus sp. FS406-22]

      See identical proteins and their annotated locations for WP_012980555.1

      UniProtKB/TrEMBL
      D3S482
      Conserved Domains (5) summary
      TIGR04173
      Location:980 → 1006
      PIP_CTERM; PIP-CTERM protein sorting domain
      smart00089
      Location:806 → 885
      PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
      COG3291
      Location:681 → 925
      COG3291; PKD repeat [Function unknown]
      cd00146
      Location:893 → 972
      PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
      pfam00801
      Location:732 → 799
      PKD; PKD domain
    Nucleotide Protein
    Heading Accession and Version

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