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    PPPDE thiol peptidase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829328, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PPPDE thiol peptidase family protein
    Primary source
    TAIR:AT4G31980
    Locus tag
    AT4G31980
    See related
    Araport:AT4G31980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11C18.13
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (15464642..15469204)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene cytochrome P450, family 82, subfamily C, polypeptide 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribosomal protein L39 family protein Neighboring gene aspartate aminotransferase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_119349.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PPPDE thiol peptidase family protein
    NP_194926.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15464642..15469204
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119349.2 → NP_194926.1  PPPDE thiol peptidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194926.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XY44, O49393
      Conserved Domains (2) summary
      pfam03140
      Location:295 → 662
      DUF247; Plant protein of unknown function
      pfam05903
      Location:18 → 154
      Peptidase_C97; PPPDE putative peptidase domain
    Nucleotide Protein
    Heading Accession and Version

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