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    PPL_04595 extracellular matrix protein [ Polysphondylium pallidum PN500 ]

    Gene ID: 31360082, updated on 16-Nov-2023

    Summary

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    Gene symbol
    PPL_04595
    Gene description
    extracellular matrix protein
    Locus tag
    PPL_04595
    Gene type
    protein coding
    RNA name
    extracellular matrix protein
    RefSeq status
    PROVISIONAL
    Organism
    Polysphondylium pallidum PN500 (strain: PN500)
    Lineage
    Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Polysphondylium
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    Genomic context

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    See PPL_04595 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_008805066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene tRNA-Val Neighboring gene tRNA-Val Neighboring gene oligomeric Golgi complex component Neighboring gene RNA-binding region RNP-1 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008805066.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication. Heidel AJ, et al. Genome Res, 2011 Nov. PMID 21757610, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    extracellular matrix protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_008805066.1 Reference assembly

      Range
      90881..91782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020575495.1 → XP_020434290.1  extracellular matrix protein [Polysphondylium pallidum PN500]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      D3B805
      Conserved Domains (1) summary
      smart01063
      Location:180 → 259
      CBM49; Carbohydrate binding domain CBM49
    Nucleotide Protein
    Heading Accession and Version