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    PPL_10438 ribosomal protein L1 family protein [ Polysphondylium pallidum PN500 ]

    Gene ID: 31365907, updated on 16-Nov-2023

    Summary

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    Gene symbol
    PPL_10438
    Gene description
    ribosomal protein L1 family protein
    Locus tag
    PPL_10438
    Gene type
    protein coding
    RNA name
    ribosomal protein L1 family protein
    RefSeq status
    PROVISIONAL
    Organism
    Polysphondylium pallidum PN500 (strain: PN500)
    Lineage
    Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Polysphondylium
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    Genomic context

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    See PPL_10438 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    3

    NW_008805076.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene RabGAP/TBC domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008805076.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication. Heidel AJ, et al. Genome Res, 2011 Nov. PMID 21757610, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    ribosomal protein L1 family protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_008805076.1 Reference assembly

      Range
      164754..166470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020581213.1 → XP_020428000.1  ribosomal protein L1 family protein [Polysphondylium pallidum PN500]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      D3BR34
      Conserved Domains (1) summary
      cd12307
      Location:352 → 425
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins
    Nucleotide Protein
    Heading Accession and Version