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    si:ch211-66i15.5 si:ch211-66i15.5 [ Danio rerio (zebrafish) ]

    Gene ID: 100148235, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-66i15.5provided by ZNC
    Official Full Name
    si:ch211-66i15.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090313-122
    See related
    AllianceGenome:ZFIN:ZDB-GENE-090313-122
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-66i15.5 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (32406010..32414885)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (32477342..32483399)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 52a Neighboring gene si:ch211-66i15.4 Neighboring gene TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor Neighboring gene transcription initiation factor TFIID subunit 8-like Neighboring gene ciliary microtubule-associated protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    L-rhamnose-binding lectin CSL3; si:ch211-66i15.5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      32406010..32414885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068216992.1 → XP_068073093.1  L-rhamnose-binding lectin CSL3

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395161.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      371861..380736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068219072.1 → XP_068075173.1  L-rhamnose-binding lectin CSL3

    Nucleotide Protein Strain
    Heading Accession and Version

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