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    SK small conductance calcium-activated potassium channel [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 657962, updated on 10-May-2024

    Summary

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    Gene symbol
    SK
    Gene description
    small conductance calcium-activated potassium channel
    Locus tag
    TcasGA2_TC014193
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 10 NC_087403.1 (3594812..3635198)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LGX NC_007416.3 (2998708..3039148)

    Chromosome 10 - NC_087403.1Genomic Context describing neighboring genes Neighboring gene cytoplasmic polyadenylation element-binding protein orb2 Neighboring gene peptidoglycan-recognition protein SC2 Neighboring gene adhesive plaque matrix protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small conductance calcium-activated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuronal cell body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small conductance calcium-activated potassium channel protein
    Names
    AUGUSTUS-3.0.2_14196
    AUGUSTUS-3.0.2_31500
    GLEAN_14193
    GLEAN_14194
    GLEAN_14196
    Small conductance calcium-activated potassium channel protein-like Protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087403.1 Reference icTriCast1.1 Primary Assembly

      Range
      3594812..3635198
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015980274.2 → XP_015835760.1  small conductance calcium-activated potassium channel protein isoform X1

      Conserved Domains (3) summary
      pfam02888
      Location:634 → 706
      CaMBD; Calmodulin binding domain
      pfam03530
      Location:345 → 453
      SK_channel; Calcium-activated SK potassium channel
      pfam07885
      Location:541 → 620
      Ion_trans_2; Ion channel

    2. XM_015980276.2 → XP_015835762.1  small conductance calcium-activated potassium channel protein isoform X2

      Conserved Domains (3) summary
      pfam02888
      Location:598 → 670
      CaMBD; Calmodulin binding domain
      pfam03530
      Location:309 → 417
      SK_channel; Calcium-activated SK potassium channel
      pfam07885
      Location:505 → 584
      Ion_trans_2; Ion channel

    3. XM_015980278.2 → XP_015835764.1  small conductance calcium-activated potassium channel protein isoform X3

      Conserved Domains (3) summary
      pfam02888
      Location:554 → 626
      CaMBD; Calmodulin binding domain
      pfam03530
      Location:265 → 373
      SK_channel; Calcium-activated SK potassium channel
      pfam07885
      Location:461 → 540
      Ion_trans_2; Ion channel

    4. XM_015980280.2 → XP_015835766.1  small conductance calcium-activated potassium channel protein isoform X4

      Conserved Domains (3) summary
      pfam02888
      Location:518 → 590
      CaMBD; Calmodulin binding domain
      pfam03530
      Location:229 → 337
      SK_channel; Calcium-activated SK potassium channel
      pfam07885
      Location:425 → 504
      Ion_trans_2; Ion channel

    5. XM_015980284.2 → XP_015835770.1  small conductance calcium-activated potassium channel protein isoform X5

      UniProtKB/TrEMBL
      D6W6Z2
      Conserved Domains (3) summary
      pfam02888
      Location:340 → 412
      CaMBD; Calmodulin binding domain
      pfam03530
      Location:51 → 159
      SK_channel; Calcium-activated SK potassium channel
      pfam07885
      Location:247 → 326
      Ion_trans_2; Ion channel

    6. XM_015980282.2 → XP_015835768.1  small conductance calcium-activated potassium channel protein isoform X5

      UniProtKB/TrEMBL
      D6W6Z2
      Conserved Domains (3) summary
      pfam02888
      Location:340 → 412
      CaMBD; Calmodulin binding domain
      pfam03530
      Location:51 → 159
      SK_channel; Calcium-activated SK potassium channel
      pfam07885
      Location:247 → 326
      Ion_trans_2; Ion channel
    Nucleotide Protein Strain
    Heading Accession and Version

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