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    NFATC2 nuclear factor of activated T cells 2 [ Pongo pygmaeus (Bornean orangutan) ]

    Gene ID: 129021828, updated on 26-Mar-2024

    Summary

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    Gene symbol
    NFATC2
    Gene description
    nuclear factor of activated T cells 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo pygmaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human mouse all
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    Genomic context

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    See NFATC2 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonPyg2-v2.0_pri (GCF_028885625.2) 21 NC_072394.2 (53997211..54172350, complement)
    RS_2023_04 previous assembly NHGRI_mPonPyg2-v1.1-hic.freeze_pri (GCF_028885625.1) 20 NC_072393.1 (53990612..54165450, complement)

    Chromosome 21 - NC_072394.2Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel modifier subfamily G member 1 Neighboring gene small ribosomal subunit protein uS2-like Neighboring gene ATPase phospholipid transporting 9A (putative) Neighboring gene spalt like transcription factor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcineurin-NFAT signaling cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytokine production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear factor of activated T-cells, cytoplasmic 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885625.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonPyg2-v2.0_pri Primary Assembly

    Genomic

    1. NC_072394.2 Reference NHGRI_mPonPyg2-v2.0_pri Primary Assembly

      Range
      53997211..54172350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054467755.2 → XP_054323730.1  nuclear factor of activated T-cells, cytoplasmic 2 isoform X4

    2. XM_063659604.1 → XP_063515674.1  nuclear factor of activated T-cells, cytoplasmic 2 isoform X5

    3. XM_054467752.1 → XP_054323727.1  nuclear factor of activated T-cells, cytoplasmic 2 isoform X1

    4. XM_063659603.1 → XP_063515673.1  nuclear factor of activated T-cells, cytoplasmic 2 isoform X3

    5. XM_063659602.1 → XP_063515672.1  nuclear factor of activated T-cells, cytoplasmic 2 isoform X2

    6. XM_054467754.2 → XP_054323729.1  nuclear factor of activated T-cells, cytoplasmic 2 isoform X2

    7. XM_063659605.1 → XP_063515675.1  nuclear factor of activated T-cells, cytoplasmic 2 isoform X5

    Nucleotide Protein
    Heading Accession and Version

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