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    LOC129019797 sialic acid-binding Ig-like lectin 5 [ Pongo pygmaeus (Bornean orangutan) ]

    Gene ID: 129019797, updated on 12-Mar-2024

    Summary

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    Gene symbol
    LOC129019797
    Gene description
    sialic acid-binding Ig-like lectin 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo pygmaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Also known as
    SIGLEC5; Siglec-5
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    Genomic context

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    See LOC129019797 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonPyg2-v2.0_pri (GCF_028885625.2) 20 NC_072393.2 (57771600..57791430, complement)
    RS_2023_04 previous assembly NHGRI_mPonPyg2-v1.1-hic.freeze_pri (GCF_028885625.1) 19 NC_072392.1 (54641298..54660674, complement)

    Chromosome 20 - NC_072393.2Genomic Context describing neighboring genes Neighboring gene sialic acid-binding Ig-like lectin 6 Neighboring gene beta-1,4-galactosyltransferase 3-like Neighboring gene zinc finger protein 175 Neighboring gene sialic acid-binding Ig-like lectin 14 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sialic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sialic acid-binding Ig-like lectin 14; sialic acid-binding Ig-like lectin 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885625.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonPyg2-v2.0_pri Primary Assembly

    Genomic

    1. NC_072393.2 Reference NHGRI_mPonPyg2-v2.0_pri Primary Assembly

      Range
      57771600..57791430 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063658264.1 → XP_063514334.1  sialic acid-binding Ig-like lectin 14 isoform X2

    2. XM_054463100.2 → XP_054319075.2  sialic acid-binding Ig-like lectin 14 isoform X4

    3. XM_054463099.2 → XP_054319074.2  sialic acid-binding Ig-like lectin 5 isoform X3

    4. XM_054463098.2 → XP_054319073.2  sialic acid-binding Ig-like lectin 5 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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