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    AFDN afadin, adherens junction formation factor [ Gorilla gorilla gorilla (western lowland gorilla) ]

    Gene ID: 101145438, updated on 1-Oct-2024

    Summary

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    Gene symbol
    AFDN
    Gene description
    afadin, adherens junction formation factor
    See related
    Ensembl:ENSGGOG00000007655
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gorilla gorilla gorilla (sub-species: gorilla)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
    Orthologs
    human mouse all
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    Genomic context

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    See AFDN in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 5 NC_073229.2 (192119576..192263871)
    RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 6 NC_073230.1 (191925627..192069914)

    Chromosome 5 - NC_073229.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109027127 Neighboring gene putative uncharacterized protein AFDN-DT Neighboring gene putative uncharacterized protein KIF25-AS1 Neighboring gene uncharacterized LOC129534223

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of protein localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    afadin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Genomic

    1. NC_073229.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

      Range
      192119576..192263871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031011932.3 → XP_030867792.2  afadin isoform X22

    2. XM_031011934.3 → XP_030867794.2  afadin isoform X24

    3. XM_031011930.3 → XP_030867790.2  afadin isoform X19

    4. XM_055392043.2 → XP_055248018.1  afadin isoform X11

    5. XM_055392051.2 → XP_055248026.1  afadin isoform X26

    6. XM_055392034.2 → XP_055248009.1  afadin isoform X1

    7. XM_031011929.3 → XP_030867789.2  afadin isoform X17

    8. XM_063708001.1 → XP_063564071.1  afadin isoform X2

    9. XM_055392035.2 → XP_055248010.1  afadin isoform X3

    10. XM_055392037.2 → XP_055248012.1  afadin isoform X5

    11. XM_055392049.2 → XP_055248024.1  afadin isoform X18

    12. XM_055392036.2 → XP_055248011.1  afadin isoform X4

    13. XM_055392039.2 → XP_055248014.1  afadin isoform X7

    14. XM_031011931.3 → XP_030867791.2  afadin isoform X20

    15. XM_055392040.2 → XP_055248015.1  afadin isoform X8

    16. XM_055392041.2 → XP_055248016.1  afadin isoform X9

    17. XM_055392050.2 → XP_055248025.1  afadin isoform X21

    18. XM_055392042.2 → XP_055248017.1  afadin isoform X10

    19. XM_031011933.3 → XP_030867793.2  afadin isoform X23

    20. XM_055392038.2 → XP_055248013.1  afadin isoform X6

    21. XM_055392047.2 → XP_055248022.1  afadin isoform X15

    22. XM_031011935.3 → XP_030867795.2  afadin isoform X25

    23. XM_055392052.2 → XP_055248027.1  afadin isoform X27

    24. XM_055392045.2 → XP_055248020.1  afadin isoform X13

    25. XM_055392048.2 → XP_055248023.1  afadin isoform X16

    26. XM_055392044.2 → XP_055248019.1  afadin isoform X12

    27. XM_055392046.2 → XP_055248021.1  afadin isoform X14

    28. XM_055392054.2 → XP_055248029.1  afadin isoform X29

    29. XM_055392053.2 → XP_055248028.1  afadin isoform X28

    Nucleotide Protein
    Heading Accession and Version

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