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    Syncrip-ps2 synaptotagmin binding, cytoplasmic RNA interacting protein, pseudogene 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100910069, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Syncrip-ps2provided by RGD
    Official Full Name
    synaptotagmin binding, cytoplasmic RNA interacting protein, pseudogene 2provided by RGD
    Primary source
    RGD:6500498
    See related
    AllianceGenome:RGD:6500498
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Thymus (RPKM 211.2), Spleen (RPKM 166.0) and 9 other tissues See more
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    Genomic context

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    See Syncrip-ps2 in Genome Data Viewer
    Location:
    8q31
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (98349672..98378405, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (89469798..89496534, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (96238266..96329246, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 14 Neighboring gene myosin light polypeptide 6-like Neighboring gene synaptotagmin binding, cytoplasmic RNA interacting protein Neighboring gene small nucleolar RNA SNORD50 Neighboring gene zinc finger protein 949 Neighboring gene tripartite motif-containing 43A Neighboring gene small nucleolar RNA SNORD50

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein Q-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      98349672..98378405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063266429.1 → XP_063122499.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X1

    2. XM_063266430.1 → XP_063122500.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X1

    3. XM_063266428.1 → XP_063122498.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X1

    4. XM_063266433.1 → XP_063122503.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X4

    5. XM_063266432.1 → XP_063122502.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X3

    6. XM_063266431.1 → XP_063122501.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X2

    7. XM_063266436.1 → XP_063122506.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X5

    8. XM_063266434.1 → XP_063122504.1  heterogeneous nuclear ribonucleoprotein Q-like isoform X5

    RNA

    1. XR_010054445.1 RNA Sequence

    2. XR_010054446.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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