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    Tsbp1 testis expressed basic protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 414826, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Tsbp1provided by RGD
    Official Full Name
    testis expressed basic protein 1provided by RGD
    Primary source
    RGD:1597063
    See related
    EnsemblRapid:ENSRNOG00000039398 AllianceGenome:RGD:1597063
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tesb
    Summary
    Predicted to be located in membrane. Orthologous to human TSBP1 (testis expressed basic protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 176.4) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tsbp1 in Genome Data Viewer
    Location:
    20p12
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (4411926..4469214, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (4410002..4467284, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (4178655..4235947)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene butyrophilin-like 5 Neighboring gene butyrophilin, subfamily 3, member A2 Neighboring gene uncharacterized LOC134483778 Neighboring gene uncharacterized LOC108349035 Neighboring gene butyrophilin-like 3 Neighboring gene butyrophilin-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The genomic sequence and comparative analysis of the rat major histocompatibility complex. Hurt P, et al. Genome Res, 2004 Apr. PMID 15060004, Free PMC Article
    2. Proteomic characterization of the human sperm nucleus. de Mateo S, et al. Proteomics, 2011 Jul. PMID 21630459
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC114433

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed basic protein 1
    Names
    Tesb pseudogene
    testis specific basic protein
    uncharacterized protein C6orf10 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113183.1 → NP_001106654.1  testis-expressed basic protein 1

      See identical proteins and their annotated locations for NP_001106654.1

      Status: VALIDATED

      Source sequence(s)
      BC097390
      UniProtKB/TrEMBL
      Q4V8H4
      Related
      ENSRNOP00000057121.4, ENSRNOT00000060378.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      4411926..4469214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063279453.1 → XP_063135523.1  testis-expressed basic protein 1 isoform X38

    2. XM_063279442.1 → XP_063135512.1  testis-expressed basic protein 1 isoform X24

    3. XM_063279440.1 → XP_063135510.1  testis-expressed basic protein 1 isoform X22

    4. XM_063279439.1 → XP_063135509.1  testis-expressed basic protein 1 isoform X21

    5. XM_039098982.2 → XP_038954910.1  testis-expressed basic protein 1 isoform X30

    6. XM_063279444.1 → XP_063135514.1  testis-expressed basic protein 1 isoform X26

    7. XM_063279443.1 → XP_063135513.1  testis-expressed basic protein 1 isoform X25

    8. XM_063279430.1 → XP_063135500.1  testis-expressed basic protein 1 isoform X10

    9. XM_063279452.1 → XP_063135522.1  testis-expressed basic protein 1 isoform X37

    10. XM_063279426.1 → XP_063135496.1  testis-expressed basic protein 1 isoform X4

    11. XM_039098984.1 → XP_038954912.1  testis-expressed basic protein 1 isoform X34

    12. XM_063279447.1 → XP_063135517.1  testis-expressed basic protein 1 isoform X31

    13. XM_039098983.1 → XP_038954911.1  testis-expressed basic protein 1 isoform X33

    14. XM_039098981.1 → XP_038954909.1  testis-expressed basic protein 1 isoform X28

    15. XM_063279446.1 → XP_063135516.1  testis-expressed basic protein 1 isoform X29

    16. XM_063279437.1 → XP_063135507.1  testis-expressed basic protein 1 isoform X19

    17. XM_063279434.1 → XP_063135504.1  testis-expressed basic protein 1 isoform X14

    18. XM_063279438.1 → XP_063135508.1  testis-expressed basic protein 1 isoform X20

    19. XM_063279432.1 → XP_063135502.1  testis-expressed basic protein 1 isoform X12

    20. XM_063279428.1 → XP_063135498.1  testis-expressed basic protein 1 isoform X5

    21. XM_063279424.1 → XP_063135494.1  testis-expressed basic protein 1 isoform X2

    22. XM_039098975.1 → XP_038954903.1  testis-expressed basic protein 1 isoform X17

    23. XM_063279433.1 → XP_063135503.1  testis-expressed basic protein 1 isoform X13

    24. XM_017601751.2 → XP_017457240.1  testis-expressed basic protein 1 isoform X18

    25. XM_017601746.2 → XP_017457235.1  testis-expressed basic protein 1 isoform X9

    26. XM_039098974.1 → XP_038954902.1  testis-expressed basic protein 1 isoform X8

    27. XM_063279425.1 → XP_063135495.1  testis-expressed basic protein 1 isoform X3

    28. XM_017601747.2 → XP_017457236.1  testis-expressed basic protein 1 isoform X7

    29. XM_017601743.2 → XP_017457232.1  testis-expressed basic protein 1 isoform X1

    30. XM_063279427.1 → XP_063135497.1  testis-expressed basic protein 1 isoform X4

    31. XM_063279435.1 → XP_063135505.1  testis-expressed basic protein 1 isoform X15

    32. XM_063279431.1 → XP_063135501.1  testis-expressed basic protein 1 isoform X11

    33. XM_063279441.1 → XP_063135511.1  testis-expressed basic protein 1 isoform X23

    34. XM_063279445.1 → XP_063135515.1  testis-expressed basic protein 1 isoform X27

    35. XM_063279436.1 → XP_063135506.1  testis-expressed basic protein 1 isoform X16

    36. XM_063279429.1 → XP_063135499.1  testis-expressed basic protein 1 isoform X6

    37. XM_063279449.1 → XP_063135519.1  testis-expressed basic protein 1 isoform X35

    38. XM_063279448.1 → XP_063135518.1  testis-expressed basic protein 1 isoform X32

    39. XM_063279451.1 → XP_063135521.1  testis-expressed basic protein 1 isoform X36

    40. XM_063279450.1 → XP_063135520.1  testis-expressed basic protein 1 isoform X36

    41. XM_039098991.2 → XP_038954919.1  testis-expressed basic protein 1 isoform X41

    42. XM_039098990.2 → XP_038954918.1  testis-expressed basic protein 1 isoform X39

    43. XM_063279454.1 → XP_063135524.1  testis-expressed basic protein 1 isoform X40

    44. XM_063279455.1 → XP_063135525.1  testis-expressed basic protein 1 isoform X42

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_004466.2: Suppressed sequence

      Description
      NG_004466.2: This RefSeq was suppressed permanently based on cDNA evidence that the locus is protein-coding.

    2. NG_004466.2: Suppressed sequence

      Description
      NG_004466.2: This RefSeq was suppressed permanently based on cDNA evidence that the locus is protein-coding.
    Nucleotide Protein Strain
    Heading Accession and Version

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