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    Clhc1 clathrin heavy chain linker domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289865, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Clhc1provided by RGD
    Official Full Name
    clathrin heavy chain linker domain containing 1provided by RGD
    Primary source
    RGD:1307937
    See related
    EnsemblRapid:ENSRNOG00000004456 AllianceGenome:RGD:1307937
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307937
    Summary
    Orthologous to human CLHC1 (clathrin heavy chain linker domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 181.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Clhc1 in Genome Data Viewer
    Location:
    14q22
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (107488983..107529667)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (103288116..103328725)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (113968563..114008015)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene mitochondrial translational initiation factor 2 Neighboring gene ribosomal protein S27a Neighboring gene NADH:ubiquinone oxidoreductase subunit S5, pseudogene 1 Neighboring gene reticulon 4 Neighboring gene EMAP like 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    clathrin heavy chain linker domain-containing protein 1
    Names
    uncharacterized protein C2orf63 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013877.1 → NP_001013899.1  clathrin heavy chain linker domain-containing protein 1

      See identical proteins and their annotated locations for NP_001013899.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083604
      UniProtKB/Swiss-Prot
      Q5XIR8
      Related
      ENSRNOP00000108221.1, ENSRNOT00000144592.1
      Conserved Domains (2) summary
      pfam13838
      Location:297 → 354
      Clathrin_H_link; Clathrin-H-link
      pfam15739
      Location:30 → 136
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      107488983..107529667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039091778.2 → XP_038947706.1  clathrin heavy chain linker domain-containing protein 1 isoform X4

      Conserved Domains (2) summary
      pfam13838
      Location:234 → 295
      Clathrin_H_link; Clathrin-H-link
      pfam15739
      Location:30 → 144
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    2. XM_017599141.3 → XP_017454630.1  clathrin heavy chain linker domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A6JQB9
      Conserved Domains (2) summary
      pfam13838
      Location:307 → 361
      Clathrin_H_link; Clathrin-H-link
      pfam15739
      Location:30 → 144
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    3. XM_063272988.1 → XP_063129058.1  clathrin heavy chain linker domain-containing protein 1 isoform X5

    4. XM_017599142.3 → XP_017454631.1  clathrin heavy chain linker domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A6JQB9
      Related
      ENSRNOP00000006085.4, ENSRNOT00000006085.7
      Conserved Domains (2) summary
      pfam13838
      Location:307 → 361
      Clathrin_H_link; Clathrin-H-link
      pfam15739
      Location:30 → 144
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    5. XM_008770455.4 → XP_008768677.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

      See identical proteins and their annotated locations for XP_008768677.1

      UniProtKB/Swiss-Prot
      Q5XIR8
      Conserved Domains (2) summary
      pfam13838
      Location:297 → 354
      Clathrin_H_link; Clathrin-H-link
      pfam15739
      Location:30 → 136
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    6. XM_039091777.2 → XP_038947705.2  clathrin heavy chain linker domain-containing protein 1 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XIR8.1 GenPept UniProtKB/Swiss-Prot:Q5XIR8

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