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    LOC110805290 peptidyl-prolyl cis-trans isomerase, chloroplastic-like [ Spinacia oleracea (spinach) ]

    Gene ID: 110805290, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC110805290
    Gene description
    peptidyl-prolyl cis-trans isomerase, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Spinacia oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
    Also known as
    TLP40; tlr40
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    Genomic context

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    See LOC110805290 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 4 NC_079490.1 (184645127..184648618, complement)
    100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018931405.1 (763383..767106)

    Chromosome 4 - NC_079490.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130472409 Neighboring gene serine/threonine-protein kinase STY13-like Neighboring gene replication protein A 70 kDa DNA-binding subunit D-like Neighboring gene uncharacterized LOC130472410

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel multi-functional chloroplast protein: identification of a 40 kDa immunophilin-like protein located in the thylakoid lumen. Fulgosi H, et al. EMBO J, 1998 Mar 16. PMID 9501079, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase, chloroplastic
    Names
    40 kDa thylakoid lumen PPIase
    40 kDa thylakoid lumen rotamase
    thylakoid lumen rotamase
    XP_021866579.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001426490.1 → NP_001413419.1  peptidyl-prolyl cis-trans isomerase, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      IADT01035849
      UniProtKB/Swiss-Prot
      O49939
      UniProtKB/TrEMBL
      A0A9R0JER5

    RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BTI_SOV_V1 Primary Assembly

    Genomic

    1. NC_079490.1 Reference BTI_SOV_V1 Primary Assembly

      Range
      184645127..184648618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022010887.2 → XP_021866579.1  peptidyl-prolyl cis-trans isomerase, chloroplastic

      Conserved Domains (1) summary
      cd01924
      Location:262 → 436
      cyclophilin_TLP40_like; cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49939.1 GenPept UniProtKB/Swiss-Prot:O49939

    Gene LinkOut

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