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    LOC110800432 30S ribosomal protein S5, chloroplastic-like [ Spinacia oleracea (spinach) ]

    Gene ID: 110800432, updated on 31-Jan-2024

    Summary

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    Gene symbol
    LOC110800432
    Gene description
    30S ribosomal protein S5, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Spinacia oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
    Also known as
    rps5
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    Genomic context

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    See LOC110800432 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 6 NC_079492.1 (34244158..34247364)
    100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018932633.1 (58041..61238, complement)

    Chromosome 6 - NC_079492.1Genomic Context describing neighboring genes Neighboring gene egg cell-secreted protein 1.4-like Neighboring gene egg cell-secreted protein 1.4-like Neighboring gene small heat shock protein, chloroplastic-like Neighboring gene auxin-induced protein PCNT115-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS5c; 30S ribosomal protein S5, chloroplastic
    Names
    Chloroplastic small ribosomal subunit protein uS5c
    ribosomal protein S5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001426461.1 → NP_001413390.1  small ribosomal subunit protein uS5c

      Status: VALIDATED

      Source sequence(s)
      IADT01052741, X93159
      UniProtKB/Swiss-Prot
      A0A0K9QCC0, P82131, Q9ST69
      UniProtKB/TrEMBL
      A0A9R0K7G8

    RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BTI_SOV_V1 Primary Assembly

    Genomic

    1. NC_079492.1 Reference BTI_SOV_V1 Primary Assembly

      Range
      34244158..34247364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022005739.2 → XP_021861431.1  30S ribosomal protein S5, chloroplastic

      Conserved Domains (1) summary
      PRK00550
      Location:140 → 308
      rpsE; 30S ribosomal protein S5; Validated
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ST69.1 GenPept UniProtKB/Swiss-Prot:Q9ST69

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