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    LOC100266493 pentatricopeptide repeat-containing protein At5g57250, mitochondrial [ Vitis vinifera (wine grape) ]

    Gene ID: 100266493, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC100266493
    Gene description
    pentatricopeptide repeat-containing protein At5g57250, mitochondrial
    Locus tag
    VIT_00012780001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100266493 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (28531653..28539539)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (23341337..23349181, complement)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene myb-related protein 308 Neighboring gene O-fucosyltransferase 9 Neighboring gene pentatricopeptide repeat-containing protein At3g61360 Neighboring gene heterogeneous nuclear ribonucleoprotein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g57250, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      28531653..28539539
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059735067.1 → XP_059591050.1  pentatricopeptide repeat-containing protein At5g57250, mitochondrial

      UniProtKB/TrEMBL
      A5AKR6, F6GYT5

    2. XM_059735066.1 → XP_059591049.1  pentatricopeptide repeat-containing protein At5g57250, mitochondrial

      UniProtKB/TrEMBL
      A5AKR6, F6GYT5

    3. XM_059735069.1 → XP_059591052.1  pentatricopeptide repeat-containing protein At5g57250, mitochondrial

      UniProtKB/TrEMBL
      A5AKR6, F6GYT5

    4. XM_059735068.1 → XP_059591051.1  pentatricopeptide repeat-containing protein At5g57250, mitochondrial

      UniProtKB/TrEMBL
      A5AKR6, F6GYT5
    Nucleotide Protein
    Heading Accession and Version

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