srrm4 serine/arginine repetitive matrix 4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: srrm4provided by ZNC
Official Full Name: serine/arginine repetitive matrix 4provided by ZNC
Primary source: ZFIN:ZDB-GENE-050208-34
See related: Ensembl:ENSDARG00000086327 AllianceGenome:ZFIN:ZDB-GENE-050208-34
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: nSR100; ZnSR100; im:7136231; si:dkey-1k23.1
Summary: Predicted to enable mRNA binding activity. Involved in mRNA splicing, via spliceosome. Acts upstream of or within axonogenesis; facial nucleus development; and neuron maturation. Part of U2-type spliceosomal complex. Is expressed in head; nervous system; neural plate; and neural tube. Orthologous to human SRRM4 (serine/arginine repetitive matrix 4). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (15667866..15808369)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (15167564..15308139)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables mRNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within axonogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within facial nucleus development	IGI Inferred from Genetic Interaction more info	PubMed
involved_in mRNA processing	IBA Inferred from Biological aspect of Ancestor more info
involved_in mRNA splicing, via spliceosome	IDA Inferred from Direct Assay more info	PubMed
involved_in neuron maturation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within neuron maturation	IGI Inferred from Genetic Interaction more info	PubMed
involved_in regulation of RNA splicing	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of U2-type spliceosomal complex	IDA Inferred from Direct Assay more info	PubMed
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: serine/arginine repetitive matrix protein 4

Names: Neural-specific serine/arginine repetitive splicing factor of 100 kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.