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    CTRG_01900 hypothetical protein [ Candida tropicalis MYA-3404 ]

    Gene ID: 8301801, updated on 17-May-2024

    Summary

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    Gene symbol
    CTRG_01900
    Gene description
    hypothetical protein
    Locus tag
    CTRG_01900
    See related
    FungiDB:CTRG_01900; VEuPathDB:CTRG_01900
    Gene type
    protein coding
    RNA name
    conserved hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Candida tropicalis MYA-3404 (strain: MYA-3404)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida
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    Genomic context

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    See CTRG_01900 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_003020049.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L11 Neighboring gene proteasome component PRE2 precursor Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003020049.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Butler G, et al. Nature, 2009 Jun 4. PMID 19465905, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables bis(5'-nucleosyl)-tetraphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sulfate adenylyltransferase (ADP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleoside catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypothetical protein
    XP_002547593.1
    • Candida DB at Institut Pasteur CTRG_01900

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003020049.1 Reference assembly

      Range
      1753823..1757536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002547547.1 → XP_002547593.1  conserved hypothetical protein [Candida tropicalis MYA-3404]

      See identical proteins and their annotated locations for XP_002547593.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C5M7R8
      Conserved Domains (4) summary
      COG5025
      Location:613 → 815
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      cd00060
      Location:170 → 254
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      pfam00250
      Location:715 → 790
      Forkhead; Forkhead domain
      NF033761
      Location:1038 → 1226
      gliding_GltJ; adventurous gliding motility protein GltJ
    Protein Accession Links
    GenPept Link UniProtKB Link
    EER35038.1

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