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    LOC8285594 probable cinnamyl alcohol dehydrogenase [ Ricinus communis (castor bean) ]

    Gene ID: 8285594, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8285594
    Gene description
    probable cinnamyl alcohol dehydrogenase
    Locus tag
    RCOM_1153860
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8285594 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 7 NC_063262.1 (3656081..3658486)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994452.1 (157058..158883)

    Chromosome 7 - NC_063262.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB44 Neighboring gene probable cadmium/zinc-transporting ATPase HMA1, chloroplastic Neighboring gene protein MRG1 Neighboring gene uncharacterized LOC125370595

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cinnamyl-alcohol dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lignin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable cinnamyl alcohol dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063262.1 Reference ASM1957865v1

      Range
      3656081..3658486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002524882.4 → XP_002524928.1  probable cinnamyl alcohol dehydrogenase

      See identical proteins and their annotated locations for XP_002524928.1

      UniProtKB/TrEMBL
      B9SG09
      Conserved Domains (1) summary
      PLN02514
      Location:3 → 352
      PLN02514; cinnamyl-alcohol dehydrogenase

    2. XM_048376334.1 → XP_048232291.1  probable cinnamyl alcohol dehydrogenase

      UniProtKB/TrEMBL
      B9SG09
      Conserved Domains (1) summary
      PLN02514
      Location:3 → 352
      PLN02514; cinnamyl-alcohol dehydrogenase

    3. XM_048376335.1 → XP_048232292.1  probable cinnamyl alcohol dehydrogenase

      UniProtKB/TrEMBL
      B9SG09
      Conserved Domains (1) summary
      PLN02514
      Location:3 → 352
      PLN02514; cinnamyl-alcohol dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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