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    LOC8267305 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [ Ricinus communis (castor bean) ]

    Gene ID: 8267305, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8267305
    Gene description
    probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
    Locus tag
    RCOM_1346080
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8267305 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 1 NC_063256.1 (8741390..8745484)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994294.1 (1176400..1180586, complement)

    Chromosome 1 - NC_063256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8267307 Neighboring gene probable glycerol-3-phosphate acyltransferase 3 Neighboring gene long chain acyl-CoA synthetase 1 Neighboring gene DUF724 domain-containing protein 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063256.1 Reference ASM1957865v1

      Range
      8741390..8745484
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048375196.1 → XP_048231153.1  probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X3

    2. XM_025156695.2 → XP_025012463.1  probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X2

      Conserved Domains (1) summary
      COG1643
      Location:34 → 537
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

    3. XM_002515199.4 → XP_002515245.1  probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1

      See identical proteins and their annotated locations for XP_002515245.1

      UniProtKB/TrEMBL
      B9RNA6
      Conserved Domains (5) summary
      smart00487
      Location:71 → 255
      DEXDc; DEAD-like helicases superfamily
      smart00847
      Location:478 → 561
      HA2; Helicase associated domain (HA2) Add an annotation
      cd00046
      Location:84 → 228
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00079
      Location:253 → 417
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam07717
      Location:595 → 698
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

    RNA

    1. XR_007216186.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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