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    LOC8274095 probable N-succinyldiaminopimelate aminotransferase DapC [ Ricinus communis (castor bean) ]

    Gene ID: 8274095, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8274095
    Gene description
    probable N-succinyldiaminopimelate aminotransferase DapC
    Locus tag
    RCOM_1031640
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8274095 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 2 NC_063257.1 (6875285..6877919, complement)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994287.1 (276727..279366)

    Chromosome 2 - NC_063257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8274097 Neighboring gene inorganic phosphate transporter 1-4 Neighboring gene protein NODULATION SIGNALING PATHWAY 2 Neighboring gene uncharacterized LOC107260851

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables kynurenine-oxoglutarate transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable N-succinyldiaminopimelate aminotransferase DapC

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063257.1 Reference ASM1957865v1

      Range
      6875285..6877919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015716075.3 → XP_015571561.1  probable N-succinyldiaminopimelate aminotransferase DapC isoform X2

      Conserved Domains (2) summary
      cd00609
      Location:105 → 430
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PLN00175
      Location:49 → 434
      PLN00175; aminotransferase family protein; Provisional

    2. XM_002513736.4 → XP_002513782.1  probable N-succinyldiaminopimelate aminotransferase DapC isoform X1

      See identical proteins and their annotated locations for XP_002513782.1

      UniProtKB/TrEMBL
      B9RJ63
      Conserved Domains (2) summary
      cd00609
      Location:105 → 457
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PLN00175
      Location:49 → 461
      PLN00175; aminotransferase family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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