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    MICPUN_81102 NADP dependent malic enzyme, cytosolic [ Micromonas commoda ]

    Gene ID: 8242505, updated on 16-Nov-2023

    Summary

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    Gene symbol
    MICPUN_81102
    Gene description
    NADP dependent malic enzyme, cytosolic
    Locus tag
    MICPUN_81102
    Gene type
    protein coding
    RNA name
    NADP dependent malic enzyme, cytosolic
    RefSeq status
    PROVISIONAL
    Organism
    Micromonas commoda (strain: RCC299)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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    Genomic context

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    See MICPUN_81102 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_013041.1 (101329..102873, complement)

    Chromosome 4 - NC_013041.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily Neighboring gene predicted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013041.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables malate dehydrogenase (decarboxylating) (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables malate dehydrogenase (decarboxylating) (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in malate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyruvate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    NADP dependent malic enzyme, cytosolic
    XP_002501597.1
    • putative NADP dependent malic enzyme, cytosolic (also called malate dehydrogenase), deduced by similarity search. TargetP predicts a 26 aa mTP but low significance

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013041.1 Reference assembly

      Range
      101329..102873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002501551.1 → XP_002501597.1  NADP dependent malic enzyme, cytosolic [Micromonas commoda]

      See identical proteins and their annotated locations for XP_002501597.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C1E598
      Conserved Domains (3) summary
      cd05312
      Location:222 → 506
      NAD_bind_1_malic_enz; NAD(P) binding domain of malic enzyme (ME), subgroup 1
      COG0281
      Location:15 → 507
      SfcA; Malic enzyme [Energy production and conversion]
      pfam00390
      Location:34 → 212
      malic; Malic enzyme, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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