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    LOC129517739 sorting nexin-12 [ Nyctereutes procyonoides (raccoon dog) ]

    Gene ID: 129517739, updated on 2-Nov-2023

    Summary

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    Gene symbol
    LOC129517739
    Gene description
    sorting nexin-12
    Locus tag
    NYPRO_LOCUS14996
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nyctereutes procyonoides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Nyctereutes
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    Genomic context

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    See LOC129517739 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2023_04 current NYPRO_anot_genome (GCF_905146905.1) Unplaced Scaffold NW_026575125.1 (49054840..49222493)

    NW_026575125.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown CXorf65 homolog Neighboring gene forkhead box O4 Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L39-like Neighboring gene 60S ribosomal protein L34-like Neighboring gene testis expressed 11 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_026575125 Unplaced Scaffold Reference NYPRO_anot_genome Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytic recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in late endosome to Golgi transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of retromer complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cationic amino acid transporter 3; sorting nexin-12; uncharacterized protein LOC129517739

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_905146905.1-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NYPRO_anot_genome Primary Assembly

    Genomic

    1. NW_026575125.1 Reference NYPRO_anot_genome Primary Assembly

      Range
      49054840..49222493
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_055337778.1 → XP_055193753.1  cationic amino acid transporter 3 isoform X1

    2. XM_055337781.1 → XP_055193756.1  cationic amino acid transporter 3 isoform X3

    3. XM_055337780.1 → XP_055193755.1  cationic amino acid transporter 3 isoform X2

    4. XM_055337782.1 → XP_055193757.1  uncharacterized protein LOC129517739 isoform X4

    5. XM_055337784.1 → XP_055193759.1  sorting nexin-12 isoform X6

    6. XM_055337783.1 → XP_055193758.1  sorting nexin-12 isoform X5

    7. XM_055337785.1 → XP_055193760.1  sorting nexin-12 isoform X7

    8. XM_055337786.1 → XP_055193761.1  sorting nexin-12 isoform X8

    Nucleotide Protein
    Heading Accession and Version

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