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    CASP3 caspase 3 [ Pongo pygmaeus (Bornean orangutan) ]

    Gene ID: 129034663, updated on 14-Nov-2024

    Summary

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    Gene symbol
    CASP3
    Gene description
    caspase 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo pygmaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human mouse all
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    Genomic context

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    See CASP3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonPyg2-v2.0_pri (GCF_028885625.2) 3 NC_072376.2 (198000944..198023265, complement)
    RS_2023_04 previous assembly NHGRI_mPonPyg2-v1.1-hic.freeze_pri (GCF_028885625.1) 4 NC_072377.1 (183150420..183172698, complement)

    Chromosome 3 - NC_072376.2Genomic Context describing neighboring genes Neighboring gene H/ACA ribonucleoprotein complex subunit 1-like Neighboring gene uncharacterized LOC129034662 Neighboring gene primase and DNA directed polymerase Neighboring gene centromere protein U

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in erythrocyte differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in keratinocyte differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of neuron apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caspase-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885625.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonPyg2-v2.0_pri Primary Assembly

    Genomic

    1. NC_072376.2 Reference NHGRI_mPonPyg2-v2.0_pri Primary Assembly

      Range
      198000944..198023265 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054484116.2 → XP_054340091.1  caspase-3

    2. XM_054484115.2 → XP_054340090.1  caspase-3

    3. XM_054484113.2 → XP_054340088.1  caspase-3

    4. XM_063664368.1 → XP_063520438.1  caspase-3

    5. XM_054484111.2 → XP_054340086.1  caspase-3

    6. XM_054484112.2 → XP_054340087.1  caspase-3

    7. XM_063664367.1 → XP_063520437.1  caspase-3

    8. XM_063664369.1 → XP_063520439.1  caspase-3

    Nucleotide Protein
    Heading Accession and Version

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