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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001289112.2 → NP_001276041.1 copine-4 isoform 1
See identical proteins and their annotated locations for NP_001276041.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1). Variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AF465771, AK295557, BC028613, BM930746, DC330179
- Consensus CDS
-
CCDS75010.1
- UniProtKB/TrEMBL
-
B7Z370
- Related
- ENSP00000478878.1, ENST00000617767.5
- Conserved Domains (3) summary
-
- cd04047
Location:173 → 285
- C2B_Copine; C2 domain second repeat in Copine
- cd04048
Location:42 → 158
- C2A_Copine; C2 domain first repeat in Copine
- pfam07002
Location:344 → 561
- Copine; Copine
-
NM_001388326.1 → NP_001375255.1 copine-4 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC076961, AC107027, AC135002, AC136276
- Conserved Domains (3) summary
-
- cd04047
Location:42 → 154
- C2B_Copine; C2 domain second repeat in Copine
- pfam07002
Location:213 → 430
- Copine
- cl14603
Location:1 → 27
- C2; C2 domain
-
NM_001388327.1 → NP_001375256.1 copine-4 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC076961, AC107027, AC135002, AC136276
- Conserved Domains (3) summary
-
- cd04047
Location:42 → 154
- C2B_Copine; C2 domain second repeat in Copine
- pfam07002
Location:213 → 430
- Copine
- cl14603
Location:1 → 27
- C2; C2 domain
-
NM_130808.3 → NP_570720.1 copine-4 isoform 2
See identical proteins and their annotated locations for NP_570720.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation from a downstream start codon, compared to variant 1. It encodes isoform 2, which has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
BC014396, BC028613, DA156722, DA194161
- Consensus CDS
-
CCDS3072.1
- UniProtKB/Swiss-Prot
- D3DNC5, Q8TEX1, Q96A23
- UniProtKB/TrEMBL
-
B7Z370
- Related
- ENSP00000411904.1, ENST00000429747.6
- Conserved Domains (3) summary
-
- cd04047
Location:155 → 267
- C2B_Copine; C2 domain second repeat in Copine
- cd04048
Location:24 → 140
- C2A_Copine; C2 domain first repeat in Copine
- pfam07002
Location:326 → 543
- Copine
-
NM_153429.2 → NP_702907.1 copine-4 isoform 1
See identical proteins and their annotated locations for NP_702907.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AF465771, BC028613, BM930746
- Consensus CDS
-
CCDS75010.1
- UniProtKB/TrEMBL
-
B7Z370
- Related
- ENSP00000424853.1, ENST00000512332.5
- Conserved Domains (3) summary
-
- cd04047
Location:173 → 285
- C2B_Copine; C2 domain second repeat in Copine
- cd04048
Location:42 → 158
- C2A_Copine; C2 domain first repeat in Copine
- pfam07002
Location:344 → 561
- Copine; Copine
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
131533569..132039606 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047447422.1 → XP_047303378.1 copine-4 isoform X1
- UniProtKB/TrEMBL
-
B7Z370
-
XM_024453339.2 → XP_024309107.1 copine-4 isoform X2
- UniProtKB/Swiss-Prot
- D3DNC5, Q8TEX1, Q96A23
- UniProtKB/TrEMBL
-
B7Z370
- Conserved Domains (3) summary
-
- cd04047
Location:155 → 267
- C2B_Copine; C2 domain second repeat in Copine
- cd04048
Location:24 → 140
- C2A_Copine; C2 domain first repeat in Copine
- pfam07002
Location:326 → 543
- Copine
-
XM_011512408.3 → XP_011510710.1 copine-4 isoform X4
See identical proteins and their annotated locations for XP_011510710.1
- Conserved Domains (3) summary
-
- cd04047
Location:42 → 154
- C2B_Copine; C2 domain second repeat in Copine
- pfam07002
Location:213 → 430
- Copine
- cl14603
Location:1 → 27
- C2; C2 domain
-
XM_047447423.1 → XP_047303379.1 copine-4 isoform X5
-
XM_017005694.3 → XP_016861183.2 copine-4 isoform X3
- Conserved Domains (3) summary
-
- cd04047
Location:177 → 289
- C2B_Copine; C2 domain second repeat in Copine
- cd04048
Location:46 → 162
- C2A_Copine; C2 domain first repeat in Copine
- cl00057
Location:348 → 453
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
134277285..134784042 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054345186.1 → XP_054201161.1 copine-4 isoform X1
- UniProtKB/TrEMBL
-
B7Z370
-
XM_054345183.1 → XP_054201158.1 copine-4 isoform X2
- UniProtKB/Swiss-Prot
- D3DNC5, Q8TEX1, Q96A23
- UniProtKB/TrEMBL
-
B7Z370
-
XM_054345185.1 → XP_054201160.1 copine-4 isoform X4
-
XM_054345187.1 → XP_054201162.1 copine-4 isoform X5
-
XM_054345184.1 → XP_054201159.1 copine-4 isoform X3