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    SPATA17 spermatogenesis associated 17 [ Homo sapiens (human) ]

    Gene ID: 128153, updated on 27-Nov-2024

    Summary

    Official Symbol
    SPATA17provided by HGNC
    Official Full Name
    spermatogenesis associated 17provided by HGNC
    Primary source
    HGNC:HGNC:25184
    See related
    Ensembl:ENSG00000162814 MIM:611032; AllianceGenome:HGNC:25184
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    IQCH; MOT17; FAP305; MSRG11; CFAP305; MSRG-11
    Summary
    Predicted to enable calmodulin binding activity. Predicted to be involved in establishment of meiotic spindle localization; mitotic cell cycle; and spindle organization. Predicted to be located in cytoplasm. Predicted to be active in spindle pole. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis (RPKM 27.4) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See SPATA17 in Genome Data Viewer
    Location:
    1q41
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (217631344..217871696)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (216872358..217112494)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (217804686..218045038)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD45 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:217555074-217555725 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:217610119-217610638 Neighboring gene Sharpr-MPRA regulatory region 1921 Neighboring gene G-patch domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1818 Neighboring gene Sharpr-MPRA regulatory region 7160 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2537 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2538 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:217833249-217834448 Neighboring gene SPATA17 antisense RNA 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:218074629-218075249 Neighboring gene uncharacterized LOC105372922 Neighboring gene ubiquitin B pseudogene 2 Neighboring gene long intergenic non-protein coding RNA 210 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:218138659-218139159 Neighboring gene VISTA enhancer hs1257 Neighboring gene long intergenic non-protein coding RNA 1653

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    spermatogenesis-associated protein 17
    Names
    IQ motif containing H
    spermatogenesis-related protein 11

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001375655.1NP_001362584.1  spermatogenesis-associated protein 17

      Status: VALIDATED

      Source sequence(s)
      AC097061, AL354659, AL445428
      Consensus CDS
      CCDS1519.1
      UniProtKB/Swiss-Prot
      A5D6N2, Q96L03
      Conserved Domains (1) summary
      smart00015
      Location:5576
      IQ; Calmodulin-binding motif
    2. NM_138796.4NP_620151.1  spermatogenesis-associated protein 17

      See identical proteins and their annotated locations for NP_620151.1

      Status: VALIDATED

      Source sequence(s)
      AL445428, AY963797, BX109478
      Consensus CDS
      CCDS1519.1
      UniProtKB/Swiss-Prot
      A5D6N2, Q96L03
      Related
      ENSP00000355900.4, ENST00000366933.5
      Conserved Domains (1) summary
      smart00015
      Location:5576
      IQ; Calmodulin-binding motif

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      217631344..217871696
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011509194.4XP_011507496.2  spermatogenesis-associated protein 17 isoform X1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      216872358..217112494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054334412.1XP_054190387.1  spermatogenesis-associated protein 17 isoform X2