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    LOC106881599 pecanex-like protein 1 [ Octopus bimaculoides (California two-spot octopus) ]

    Gene ID: 106881599, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC106881599
    Gene description
    pecanex-like protein 1
    Locus tag
    OCBIM_22009797mg
    See related
    EnsemblRapid:LOC106881599
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Octopus bimaculoides
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Cephalopoda; Coleoidea; Octopodiformes; Octopoda; Incirrata; Octopodidae; Octopus
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    Genomic context

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    See LOC106881599 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    RS_2023_01 current ASM119413v2 (GCF_001194135.2) 6 NC_068986.1 (115799648..115905142, complement)
    100 previous assembly Octopus_bimaculoides_v2_0 (GCF_001194135.1) Unplaced Scaffold NW_014723026.1 (128533..233168, complement)

    Chromosome 6 - NC_068986.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106872065 Neighboring gene sodium-dependent serotonin transporter Neighboring gene uncharacterized LOC128248182 Neighboring gene mitogen-activated protein kinase kinase kinase 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pecanex-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001194135.2-RS_

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM119413v2 Primary Assembly

    Genomic

    1. NC_068986.1 Reference ASM119413v2 Primary Assembly

      Range
      115799648..115905142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014932059.2 → XP_014787545.1  pecanex-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A0L8FRS2
      Related
      XP_014787545.1, XM_014932059.2
      Conserved Domains (2) summary
      TIGR04370
      Location:1085 → 1286
      glyco_rpt_poly; oligosaccharide repeat unit polymerase
      pfam05041
      Location:1858 → 2084
      Pecanex_C; Pecanex protein (C-terminus)

    2. XM_014932061.2 → XP_014787547.1  pecanex-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A0L8FRS2
      Related
      XP_014787547.1, XM_014932061.2
      Conserved Domains (2) summary
      TIGR04370
      Location:963 → 1164
      glyco_rpt_poly; oligosaccharide repeat unit polymerase
      pfam05041
      Location:1736 → 1962
      Pecanex_C; Pecanex protein (C-terminus)

    3. XM_014932060.2 → XP_014787546.1  pecanex-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A0L8FRS2
      Related
      XP_014787546.1, XM_014932060.2
      Conserved Domains (2) summary
      TIGR04370
      Location:1086 → 1287
      glyco_rpt_poly; oligosaccharide repeat unit polymerase
      pfam05041
      Location:1857 → 2083
      Pecanex_C; Pecanex protein (C-terminus)

    4. XM_014932057.2 → XP_014787543.1  pecanex-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0L8FRS2
      Related
      XP_014787543.1, XM_014932057.2
      Conserved Domains (2) summary
      TIGR04370
      Location:1086 → 1287
      glyco_rpt_poly; oligosaccharide repeat unit polymerase
      pfam05041
      Location:1859 → 2085
      Pecanex_C; Pecanex protein (C-terminus)

    5. XM_014932062.2 → XP_014787548.1  pecanex-like protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A0L8FRS2
      Related
      XP_014787548.1, XM_014932062.2
      Conserved Domains (2) summary
      TIGR04370
      Location:739 → 940
      glyco_rpt_poly; oligosaccharide repeat unit polymerase
      pfam05041
      Location:1512 → 1738
      Pecanex_C; Pecanex protein (C-terminus)

    6. XM_052969091.1 → XP_052825051.1  pecanex-like protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A0L8FRS2
      Related
      XP_052825051.1, XM_052969091.1
    Nucleotide Protein
    Heading Accession and Version

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