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    LOC106878756 beta-hexosaminidase subunit beta [ Octopus bimaculoides (California two-spot octopus) ]

    Gene ID: 106878756, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC106878756
    Gene description
    beta-hexosaminidase subunit beta
    Locus tag
    OCBIM_22039065mg
    See related
    EnsemblRapid:LOC106878756
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Octopus bimaculoides
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Cephalopoda; Coleoidea; Octopodiformes; Octopoda; Incirrata; Octopodidae; Octopus
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    Genomic context

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    See LOC106878756 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_01 current ASM119413v2 (GCF_001194135.2) 4 NC_068984.1 (145361250..145392258, complement)
    100 previous assembly Octopus_bimaculoides_v2_0 (GCF_001194135.1) Unplaced Scaffold NW_014692782.1 (408003..438952, complement)

    Chromosome 4 - NC_068984.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106878757 Neighboring gene beta-microseminoprotein Neighboring gene retinal guanylyl cyclase 1 Neighboring gene procollagen galactosyltransferase 1 Neighboring gene uncharacterized LOC106874752 Neighboring gene tubulin beta chain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-N-acetylhexosaminidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ganglioside catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycosaminoglycan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-hexosaminidase subunit beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001194135.2-RS_

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM119413v2 Primary Assembly

    Genomic

    1. NC_068984.1 Reference ASM119413v2 Primary Assembly

      Range
      145361250..145392258 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052967697.1 → XP_052823657.1  beta-hexosaminidase subunit beta

      Related
      XP_052823657.1, XM_052967697.1
    Nucleotide Protein
    Heading Accession and Version

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