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    LOC8073882 probable 4-coumarate--CoA ligase 2 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8073882, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8073882
    Gene description
    probable 4-coumarate--CoA ligase 2
    Locus tag
    SORBI_3004G272700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8073882 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 4 NC_012873.2 (61637063..61641343)

    Chromosome 4 - NC_012873.2Genomic Context describing neighboring genes Neighboring gene ATPase family AAA domain-containing protein 3-A Neighboring gene protein ROOT PRIMORDIUM DEFECTIVE 1 Neighboring gene pentatricopeptide repeat-containing protein At1g31920 Neighboring gene TOM1-like protein 2 Neighboring gene uncharacterized LOC110434566

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012873.2 Chromosome 4 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4-coumarate-CoA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable 4-coumarate--CoA ligase 2
    Names
    4-hydroxycinnamic acid: CoA ligase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012873.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      61637063..61641343
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002452659.2 → XP_002452704.1  probable 4-coumarate--CoA ligase 2

      See identical proteins and their annotated locations for XP_002452704.1

      UniProtKB/TrEMBL
      A0A921R8K6, C5Y0F9
      Conserved Domains (1) summary
      PLN02246
      Location:20 → 563
      PLN02246; 4-coumarate--CoA ligase
    Nucleotide Protein
    Heading Accession and Version

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