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    LOC128031775 sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 [ Carassius gibelio (silver crucian carp) ]

    Gene ID: 128031775, updated on 28-May-2024

    Summary

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    Gene symbol
    LOC128031775
    Gene description
    sphingolipid delta(4)-desaturase/C4-monooxygenase DES2
    See related
    EnsemblRapid:ENSCGBG00020054623
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carassius gibelio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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    Genomic context

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    See LOC128031775 in Genome Data Viewer
    Location:
    chromosome: A17
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) A17 NC_068387.1 (13275091..13280291, complement)

    Chromosome A17 - NC_068387.1Genomic Context describing neighboring genes Neighboring gene echinoderm microtubule-associated protein-like 1 Neighboring gene ena/VASP-like protein Neighboring gene transcriptional repressor protein YY1-like Neighboring gene tripeptidyl-peptidase 1 Neighboring gene growth/differentiation factor 6-A-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_068387.1 Chromosome A17 Reference carGib1.2-hapl.c Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sphingolipid delta-4 desaturase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sphingosine hydroxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphinganine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sphingolipid delta(4)-desaturase/C4-monooxygenase DES2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference carGib1.2-hapl.c Primary Assembly

    Genomic

    1. NC_068387.1 Reference carGib1.2-hapl.c Primary Assembly

      Range
      13275091..13280291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052620187.1 → XP_052476147.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2

      Related
      ENSCGBP00020073256.1, ENSCGBT00020105348.1
    Nucleotide Protein
    Heading Accession and Version

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