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    LOC7473168 ATP-dependent DNA helicase DDM1 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7473168, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC7473168
    Gene description
    ATP-dependent DNA helicase DDM1
    Locus tag
    POPTR_007G026700v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7473168 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 7 NC_037291.2 (2058363..2065638, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 7 NC_037291.1 (2026051..2033328, complement)

    Chromosome 7 - NC_037291.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112328193 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene sulfite exporter TauE/SafE family protein 3 Neighboring gene U1 small nuclear ribonucleoprotein 70 kDa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Poplars with a PtDDM1-RNAi transgene have reduced DNA methylation and show aberrant post-dormancy morphology. Zhu R, et al. Planta, 2013 Jun. PMID 23455459
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent DNA helicase DDM1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037291.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      2058363..2065638 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002310187.3 → XP_002310223.2  ATP-dependent DNA helicase DDM1 isoform X1

      UniProtKB/TrEMBL
      B9HEW0

    2. XM_052454789.1 → XP_052310749.1  ATP-dependent DNA helicase DDM1 isoform X2

      UniProtKB/TrEMBL
      B9HEW0
    Nucleotide Protein
    Heading Accession and Version

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