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    Polyketide cyclase/dehydrase and lipid transport superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827097, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    Primary source
    TAIR:AT4G14500
    Locus tag
    AT4G14500
    See related
    Araport:AT4G14500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3290W; FCAALL.198
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (8334055..8337640)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Protein kinase superfamily protein Neighboring gene SMAD/FHA domain-containing protein Neighboring gene ncRNA Neighboring gene CRM family member 3B Neighboring gene DNA-directed RNA polymerase II-like protein Neighboring gene agamous-like MADS-box protein Neighboring gene nuclear factor Y, subunit B3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160761.2
    NM_117530.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    NP_001154233.1
    • Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G23080.1); Has 214 Blast hits to 213 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_567433.1
    • Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G23080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8334055..8337640
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160761.2 → NP_001154233.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154233.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JVH0
      Conserved Domains (1) summary
      cl14643
      Location:137 → 268
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    2. NM_117530.3 → NP_567433.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567433.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USD2, A0A5S9XSB7, A0A654FP60, Q944M2
      Conserved Domains (1) summary
      cd08870
      Location:137 → 345
      START_STARD2_7-like; Lipid-binding START domain of mammalian STARD2, -7, and related proteins
    Nucleotide Protein
    Heading Accession and Version

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