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    RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [ Gopherus flavomarginatus (Mexican gopher tortoise) ]

    Gene ID: 127054599, updated on 24-Mar-2024

    Summary

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    Gene symbol
    RRP9
    Gene description
    ribosomal RNA processing 9, U3 small nucleolar RNA binding protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gopherus flavomarginatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Gopherus
    Orthologs
    human mouse all
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    Genomic context

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    See RRP9 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_02 current rGopFla2.mat.asm (GCF_025201925.1) 6 NC_066622.1 (47191173..47210721, complement)

    Chromosome 6 - NC_066622.1Genomic Context describing neighboring genes Neighboring gene testis expressed 264, ER-phagy receptor Neighboring gene glutamate metabotropic receptor 2 Neighboring gene IQ domain-containing protein F5-like Neighboring gene poly(ADP-ribose) polymerase family member 3 Neighboring gene G protein-coupled receptor 62

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_066622.1 Chromosome 6 Reference rGopFla2.mat.asm

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U3 small nucleolar RNA-interacting protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_025201925.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rGopFla2.mat.asm

    Genomic

    1. NC_066622.1 Reference rGopFla2.mat.asm

      Range
      47191173..47210721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_050960894.1 → XP_050816851.1  U3 small nucleolar RNA-interacting protein 2 isoform X2

    2. XM_050960893.1 → XP_050816850.1  U3 small nucleolar RNA-interacting protein 2 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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