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    DENND5B DENN domain containing 5B [ Cygnus atratus (black swan) ]

    Gene ID: 118250116, updated on 20-Mar-2024

    Summary

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    Gene symbol
    DENND5B
    Gene description
    DENN domain containing 5B
    See related
    EnsemblRapid:ENSACYG00000016966
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cygnus atratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
    Orthologs
    human mouse all
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    Genomic context

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    See DENND5B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 1 NC_066362.1 (63703082..63809786)
    100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336614.1 (10698580..10805284, complement)

    Chromosome 1 - NC_066362.1Genomic Context describing neighboring genes Neighboring gene antagonist of mitotic exit network 1 homolog Neighboring gene electron transfer flavoprotein subunit beta lysine methyltransferase Neighboring gene uncharacterized LOC118250128 Neighboring gene SIN3-HDAC complex associated factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DENN domain-containing protein 5B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Genomic

    1. NC_066362.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

      Range
      63703082..63809786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_050712598.1 → XP_050568555.1  DENN domain-containing protein 5B isoform X1

    2. XM_035550836.1 → XP_035406729.1  DENN domain-containing protein 5B isoform X2

      Related
      ENSACYP00000027975.1, ENSACYT00000030339.1
      Conserved Domains (6) summary
      smart00801
      Location:494 → 569
      dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
      smart00800
      Location:13 → 115
      uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
      cd01757
      Location:931 → 1039
      PLAT_RAB6IP1; PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed ...
      pfam02141
      Location:182 → 370
      DENN; DENN (AEX-3) domain
      pfam02759
      Location:775 → 919
      RUN; RUN domain
      cl02689
      Location:1122 → 1259
      RUN; RUN domain
    Nucleotide Protein
    Heading Accession and Version

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