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    RPSa Ribosomal protein Sa, component of cytosolic 80S ribosome and 40S small subunit [ Ostreococcus lucimarinus CCE9901 ]

    Gene ID: 5000849, updated on 21-Dec-2023

    Summary

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    Gene symbol
    RPSa
    Gene description
    Ribosomal protein Sa, component of cytosolic 80S ribosome and 40S small subunit
    Locus tag
    OSTLU_12355
    Gene type
    protein coding
    RNA name
    Ribosomal protein Sa, component of cytosolic 80S ribosome and 40S small subunit
    RefSeq status
    PROVISIONAL
    Organism
    Ostreococcus lucimarinus CCE9901 (strain: CCE9901)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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    Genomic context

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    See RPSa in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_009357.1 (530423..531295)

    Chromosome 3 - NC_009357.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009357.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Palenik B, et al. Proc Natl Acad Sci U S A, 2007 May 1. PMID 17460045, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    Ribosomal protein Sa, component of cytosolic 80S ribosome and 40S small subunit
    XP_001416686.1
    • Cytosolic 80S ribosomal protein Sa; Cytosolic 40S small ribosomal subunit protein Sa

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009357.1 Reference assembly

      Range
      530423..531295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001416649.1 → XP_001416686.1  Ribosomal protein Sa, component of cytosolic 80S ribosome and 40S small subunit [Ostreococcus lucimarinus CCE9901]

      See identical proteins and their annotated locations for XP_001416686.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      A4RUK2
      UniProtKB/TrEMBL
      A0A7R9T249
      Conserved Domains (2) summary
      PTZ00254
      Location:1 → 247
      PTZ00254; 40S ribosomal protein SA; Provisional
      cl00315
      Location:7 → 203
      RPS2; Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4RUK2.1

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