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    PICK1 protein interacting with PRKCA 1 [ Orcinus orca (killer whale) ]

    Gene ID: 101276285, updated on 8-Mar-2024

    Summary

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    Gene symbol
    PICK1
    Gene description
    protein interacting with PRKCA 1
    See related
    EnsemblRapid:ENSOORG00010019357
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Orcinus orca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
    Orthologs
    human mouse all
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    Genomic context

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    See PICK1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 11 NC_064569.1 (92934994..92952424)

    Chromosome 11 - NC_064569.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105748497 Neighboring gene SRY-box transcription factor 10 Neighboring gene uncharacterized LOC125960558 Neighboring gene uncharacterized LOC125960559 Neighboring gene solute carrier family 16 member 8 Neighboring gene BAR/IMD domain containing adaptor protein 2 like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064569.1 Chromosome 11 Reference mOrcOrc1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase C binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in dendritic spine maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of receptor internalization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in receptor clustering IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PRKCA-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOrcOrc1.1 Primary Assembly

    Genomic

    1. NC_064569.1 Reference mOrcOrc1.1 Primary Assembly

      Range
      92934994..92952424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_049694968.1 → XP_049550925.1  PRKCA-binding protein isoform X1

    2. XM_049694969.1 → XP_049550926.1  PRKCA-binding protein isoform X1

    3. XM_049694971.1 → XP_049550928.1  PRKCA-binding protein isoform X2

    4. XM_004279475.3 → XP_004279523.1  PRKCA-binding protein isoform X4

      See identical proteins and their annotated locations for XP_004279523.1

      Conserved Domains (2) summary
      cd07659
      Location:146 → 360
      BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1
      smart00228
      Location:19 → 99
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2

    5. XM_049694972.1 → XP_049550929.1  PRKCA-binding protein isoform X2

    6. XM_033405053.2 → XP_033260944.1  PRKCA-binding protein isoform X4

      Conserved Domains (2) summary
      cd07659
      Location:146 → 360
      BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1
      smart00228
      Location:19 → 99
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2

    7. XM_004279474.3 → XP_004279522.1  PRKCA-binding protein isoform X4

      See identical proteins and their annotated locations for XP_004279522.1

      Related
      ENSOORP00010025558.1, ENSOORT00010028996.1
      Conserved Domains (2) summary
      cd07659
      Location:146 → 360
      BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1
      smart00228
      Location:19 → 99
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2

    8. XM_033405052.2 → XP_033260943.1  PRKCA-binding protein isoform X1

      Conserved Domains (2) summary
      cd07659
      Location:177 → 391
      BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1
      smart00228
      Location:28 → 103
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2

    9. XM_049694973.1 → XP_049550930.1  PRKCA-binding protein isoform X3

    10. XM_049694970.1 → XP_049550927.1  PRKCA-binding protein isoform X2

    11. XM_033405054.2 → XP_033260945.1  PRKCA-binding protein isoform X5

      Conserved Domains (2) summary
      cd07659
      Location:177 → 367
      BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1
      smart00228
      Location:28 → 103
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    Nucleotide Protein
    Heading Accession and Version

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