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    FLA2 FASCICLIN-like arabinogalactan 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826885, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FLA2
    Official Full Name
    FASCICLIN-like arabinogalactan 2
    Primary source
    TAIR:AT4G12730
    Locus tag
    AT4G12730
    See related
    Araport:AT4G12730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FASCICLIN-like arabinogalactan 2; T20K18.80; T20K18_80
    Summary
    AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds
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    Genomic context

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    See FLA2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (7491227..7493080, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene MutT/nudix family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins. Elortza F, et al. Mol Cell Proteomics, 2003 Dec. PMID 14517339
    2. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    4. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    5. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117342.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    FASCICLIN-like arabinogalactan 2
    NP_193009.1
    • FASCICLIN-like arabinogalactan 2 (FLA2); INVOLVED IN: response to cyclopentenone; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan 1 (TAIR:AT5G55730.2); Has 750 Blast hits to 734 proteins in 58 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 13; Plants - 722; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7491227..7493080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117342.3 → NP_193009.1  FASCICLIN-like arabinogalactan 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193009.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9T2, Q9C5Q6, Q9SU13
      UniProtKB/TrEMBL
      A0A7G2F2E2
      Conserved Domains (3) summary
      smart00554
      Location:225 → 329
      FAS1; Four repeated domains in the Fasciclin I family of proteins, present in many other contexts
      COG2335
      Location:25 → 178
      FAS1; Uncaracterized surface protein containing fasciclin (FAS1) repeats [General function prediction only]
      cl02663
      Location:37 → 106
      Fasciclin; Fasciclin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SU13.1

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