U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC100257130 probable starch synthase 4, chloroplastic/amyloplastic [ Vitis vinifera (wine grape) ]

    Gene ID: 100257130, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100257130
    Gene description
    probable starch synthase 4, chloroplastic/amyloplastic
    Locus tag
    VIT_00021404001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0003677 GO:0003676 GO:0016853
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100257130 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 10 NC_081814.1 (10032617..10090856)
    102 previous assembly 12X (GCF_000003745.3) 10 NC_012016.3 (4955624..5013956)

    Chromosome 10 - NC_081814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132254444 Neighboring gene pentatricopeptide repeat-containing protein At3g14730 Neighboring gene chlorophyll a-b binding protein 40, chloroplastic-like Neighboring gene chlorophyll a-b binding protein of LHCII type 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable starch synthase 4, chloroplastic/amyloplastic

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081814.1 Reference ASM3070453v1 Primary Assembly

      Range
      10032617..10090856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002274680.4 → XP_002274716.1  probable starch synthase 4, chloroplastic/amyloplastic

      See identical proteins and their annotated locations for XP_002274716.1

      UniProtKB/TrEMBL
      D7TK12
      Conserved Domains (3) summary
      cd03791
      Location:515 → 1000
      GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
      PLN02939
      Location:1 → 1011
      PLN02939; transferase, transferring glycosyl groups
      pfam16034
      Location:271 → 403
      JAKMIP_CC3; JAKMIP CC3 domain

    RNA

    1. XR_786751.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials