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    LOC100260995 alpha-dioxygenase 2 [ Vitis vinifera (wine grape) ]

    Gene ID: 100260995, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100260995
    Gene description
    alpha-dioxygenase 2
    Locus tag
    VIT_00008396001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100260995 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 17 NC_081821.1 (2946326..2950034, complement)
    102 previous assembly 12X (GCF_000003745.3) 17 NC_012023.3 (2506025..2509756, complement)

    Chromosome 17 - NC_081821.1Genomic Context describing neighboring genes Neighboring gene beta-glucosidase 44 Neighboring gene exonuclease 1 Neighboring gene uncharacterized LOC100268025 Neighboring gene guanine nucleotide-binding protein subunit beta-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-dioxygenase 2
    Names
    prostaglandin G/H synthase 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081821.1 Reference ASM3070453v1 Primary Assembly

      Range
      2946326..2950034 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002281321.5 → XP_002281357.1  alpha-dioxygenase 2

      See identical proteins and their annotated locations for XP_002281357.1

      UniProtKB/TrEMBL
      A5B845, D7SJ80
      Conserved Domains (2) summary
      PLN02283
      Location:1 → 634
      PLN02283; alpha-dioxygenase
      pfam03098
      Location:84 → 603
      An_peroxidase; Animal haem peroxidase
    Nucleotide Protein
    Heading Accession and Version

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