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    LOC100254979 O-fucosyltransferase 36 [ Vitis vinifera (wine grape) ]

    Gene ID: 100254979, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100254979
    Gene description
    O-fucosyltransferase 36
    Locus tag
    VIT_00016658001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100254979 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 9 NC_081813.1 (214499..219744, complement)
    102 previous assembly 12X (GCF_000003745.3) 9 NC_012015.3 (178513..183701, complement)

    Chromosome 9 - NC_081813.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit 7 Neighboring gene uncharacterized protein YDL183C Neighboring gene uncharacterized LOC100241217 Neighboring gene RING-H2 finger protein ATL3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptide-O-fucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein O-linked fucosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    O-fucosyltransferase 36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081813.1 Reference ASM3070453v1 Primary Assembly

      Range
      214499..219744 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002264051.4 → XP_002264087.1  O-fucosyltransferase 36

      UniProtKB/TrEMBL
      A0A438EWR7, F6HXK5
      Conserved Domains (2) summary
      cd11296
      Location:374 → 534
      O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins
      pfam10250
      Location:236 → 534
      O-FucT; GDP-fucose protein O-fucosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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