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    LOC100255849 late embryogenesis abundant protein B19.3 [ Vitis vinifera (wine grape) ]

    Gene ID: 100255849, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC100255849
    Gene description
    late embryogenesis abundant protein B19.3
    Locus tag
    VIT_00011188001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100255849 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (9144807..9160246, complement)
    102 previous assembly 12X (GCF_000003745.3) 8 NC_012014.3 (7969436..7984842, complement)

    Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132254148 Neighboring gene chlorophyll synthase, chloroplastic Neighboring gene vegetative cell wall protein gp1 Neighboring gene uncharacterized LOC132254161

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to abscisic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    late embryogenesis abundant protein B19.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

      Range
      9144807..9160246 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002263178.4 → XP_002263214.1  late embryogenesis abundant protein B19.3

      See identical proteins and their annotated locations for XP_002263214.1

      UniProtKB/TrEMBL
      A0A438DAN4, F6H6R9
      Conserved Domains (1) summary
      pfam00477
      Location:2 → 128
      LEA_5; Small hydrophilic plant seed protein

    2. XM_059738926.1 → XP_059594909.1  late embryogenesis abundant protein B19.3

      UniProtKB/TrEMBL
      A0A438DAN4, F6H6R9

    3. XM_059738925.1 → XP_059594908.1  late embryogenesis abundant protein B19.3

      UniProtKB/TrEMBL
      A0A438DAN4, F6H6R9
    Nucleotide Protein
    Heading Accession and Version

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