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    LOC100241020 molybdopterin synthase catalytic subunit [ Vitis vinifera (wine grape) ]

    Gene ID: 100241020, updated on 19-Jun-2024

    Summary

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    Gene symbol
    LOC100241020
    Gene description
    molybdopterin synthase catalytic subunit
    Locus tag
    VIT_00037393001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0006777
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    Genomic context

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    See LOC100241020 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (17479100..17481078, complement)
    102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (14459627..14461578, complement)

    Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100253016 Neighboring gene uncharacterized LOC132253885 Neighboring gene uncharacterized LOC104879661 Neighboring gene protein DGS1, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables molybdopterin synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Mo-molybdopterin cofactor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    molybdopterin synthase catalytic subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

      Range
      17479100..17481078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010653265.2 → XP_010651567.1  molybdopterin synthase catalytic subunit

      See identical proteins and their annotated locations for XP_010651567.1

      UniProtKB/TrEMBL
      A0A438I1W2, A0A438I247, F6HAF9
      Conserved Domains (1) summary
      PLN02390
      Location:29 → 139
      PLN02390; molybdopterin synthase catalytic subunit

    2. XM_002268152.5 → XP_002268188.1  molybdopterin synthase catalytic subunit

      See identical proteins and their annotated locations for XP_002268188.1

      UniProtKB/TrEMBL
      A0A438I1W2, A0A438I247, F6HAF9
      Conserved Domains (1) summary
      PLN02390
      Location:29 → 139
      PLN02390; molybdopterin synthase catalytic subunit
    Nucleotide Protein
    Heading Accession and Version

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