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    LOC100258713 uncharacterized LOC100258713 [ Vitis vinifera (wine grape) ]

    Gene ID: 100258713, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100258713
    Gene description
    uncharacterized LOC100258713
    Locus tag
    VIT_00024914001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0031072 GO:0051082 GO:0008270 GO:0046872 GO:0005524 GO:0009408 GO:0006986 GO:0006457 GO:0006260
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    Genomic context

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    See LOC100258713 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (6106116..6110131)
    102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (6080860..6084398)

    Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g59600 Neighboring gene pentatricopeptide repeat-containing protein At3g24000, mitochondrial Neighboring gene protein TOC75-3, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At4g13650

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone cofactor-dependent protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100258713
    Names
    chaperone protein DnaJ-like
    dnaJ homolog subfamily B member 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

      Range
      6106116..6110131
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002282754.4 → XP_002282790.1  uncharacterized protein LOC100258713 isoform X2

      UniProtKB/TrEMBL
      A5BDU1
      Conserved Domains (1) summary
      pfam00226
      Location:72 → 133
      DnaJ; DnaJ domain

    2. XM_002282875.4 → XP_002282911.1  uncharacterized protein LOC100258713 isoform X1

      See identical proteins and their annotated locations for XP_002282911.1

      UniProtKB/TrEMBL
      D7SKB6
      Conserved Domains (1) summary
      pfam00226
      Location:72 → 133
      DnaJ; DnaJ domain
    Nucleotide Protein
    Heading Accession and Version

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