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    LOC100241468 protein ENHANCED DISEASE RESISTANCE 2 [ Vitis vinifera (wine grape) ]

    Gene ID: 100241468, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100241468
    Gene description
    protein ENHANCED DISEASE RESISTANCE 2
    Locus tag
    VIT_00022623001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100241468 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 2 NC_081806.1 (15625306..15703638)
    102 previous assembly 12X (GCF_000003745.3) 2 NC_012008.3 (13595087..13673674)

    Chromosome 2 - NC_081806.1Genomic Context describing neighboring genes Neighboring gene protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic Neighboring gene protein ENHANCED DISEASE RESISTANCE 2 Neighboring gene scopoletin glucosyltransferase Neighboring gene protein ENHANCED DISEASE RESISTANCE 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ENHANCED DISEASE RESISTANCE 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081806.1 Reference ASM3070453v1 Primary Assembly

      Range
      15625306..15703638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010666465.3 → XP_010664767.1  protein ENHANCED DISEASE RESISTANCE 2 isoform X1

      See identical proteins and their annotated locations for XP_010664767.1

      UniProtKB/TrEMBL
      D7U3Q6
      Conserved Domains (4) summary
      cd00177
      Location:200 → 378
      START; Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins
      smart00233
      Location:6 → 112
      PH; Pleckstrin homology domain
      PLN00188
      Location:3 → 733
      PLN00188; enhanced disease resistance protein (EDR2); Provisional
      pfam07059
      Location:515 → 718
      DUF1336; Protein of unknown function (DUF1336)

    2. XM_002262825.5 → XP_002262861.1  protein ENHANCED DISEASE RESISTANCE 2 isoform X1

      See identical proteins and their annotated locations for XP_002262861.1

      UniProtKB/TrEMBL
      D7U3Q6
      Conserved Domains (4) summary
      cd00177
      Location:200 → 378
      START; Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins
      smart00233
      Location:6 → 112
      PH; Pleckstrin homology domain
      PLN00188
      Location:3 → 733
      PLN00188; enhanced disease resistance protein (EDR2); Provisional
      pfam07059
      Location:515 → 718
      DUF1336; Protein of unknown function (DUF1336)

    3. XM_010666469.3 → XP_010664771.1  protein ENHANCED DISEASE RESISTANCE 2 isoform X2

      Conserved Domains (4) summary
      cd00177
      Location:198 → 376
      START; Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins
      smart00233
      Location:6 → 112
      PH; Pleckstrin homology domain
      PLN00188
      Location:3 → 731
      PLN00188; enhanced disease resistance protein (EDR2); Provisional
      pfam07059
      Location:513 → 716
      DUF1336; Protein of unknown function (DUF1336)

    4. XM_059734719.1 → XP_059590702.1  protein ENHANCED DISEASE RESISTANCE 2 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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