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    LOC100255046 uncharacterized LOC100255046 [ Vitis vinifera (wine grape) ]

    Gene ID: 100255046, updated on 20-Nov-2023

    Summary

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    Gene symbol
    LOC100255046
    Gene description
    uncharacterized LOC100255046
    Locus tag
    VIT_00020006001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100255046 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (12040625..12047203, complement)
    102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (11714598..11721088, complement)

    Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene cullin-3A Neighboring gene probable hexosyltransferase MUCI70 Neighboring gene cysteine-rich repeat secretory protein 38

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC100255046
    Names
    haloacid dehalogenase-like hydrolase domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

      Range
      12040625..12047203 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002274366.4 → XP_002274402.1  uncharacterized protein LOC100255046

      See identical proteins and their annotated locations for XP_002274402.1

      UniProtKB/TrEMBL
      A0A438HD11, D7TNA0
      Conserved Domains (2) summary
      TIGR01549
      Location:124 → 233
      HAD-SF-IA-v1; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
      TIGR02252
      Location:49 → 238
      DREG-2; REG-2-like, HAD superfamily (subfamily IA) hydrolase
    Nucleotide Protein
    Heading Accession and Version

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