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    LOC7477172 diphosphomevalonate decarboxylase MVD2, peroxisomal [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7477172, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7477172
    Gene description
    diphosphomevalonate decarboxylase MVD2, peroxisomal
    Locus tag
    POPTR_010G237900v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7477172 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 10 NC_037294.2 (21748496..21754766, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 10 NC_037294.1 (21688356..21694613, complement)

    Chromosome 10 - NC_037294.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7491626 Neighboring gene uncharacterized LOC7477173 Neighboring gene uncharacterized LOC18102779 Neighboring gene germin-like protein subfamily 3 member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables diphosphomevalonate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isopentenyl diphosphate biosynthetic process, mevalonate pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    diphosphomevalonate decarboxylase MVD2, peroxisomal

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037294.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      21748496..21754766 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002315405.4 → XP_002315441.1  diphosphomevalonate decarboxylase MVD2, peroxisomal

      See identical proteins and their annotated locations for XP_002315441.1

      UniProtKB/TrEMBL
      B9HVY0
      Conserved Domains (1) summary
      PLN02407
      Location:7 → 348
      PLN02407; diphosphomevalonate decarboxylase
    Nucleotide Protein
    Heading Accession and Version

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