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    LOC8262110 protein SYM1 [ Ricinus communis (castor bean) ]

    Gene ID: 8262110, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC8262110
    Gene description
    protein SYM1
    Locus tag
    RCOM_1175990
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8262110 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 7 NC_063262.1 (770230..775127)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994326.1 (777585..781017, complement)

    Chromosome 7 - NC_063262.1Genomic Context describing neighboring genes Neighboring gene indole-3-acetic acid-amido synthetase GH3.10 Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene putative cell wall protein Neighboring gene probable protein phosphatase 2C 52

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mpv17-like protein; peroxisomal membrane protein 2; protein SYM1; uncharacterized protein LOC8262110

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063262.1 Reference ASM1957865v1

      Range
      770230..775127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048377486.1 → XP_048233443.1  uncharacterized protein LOC8262110 isoform X4

      UniProtKB/TrEMBL
      B9RW43

    2. XM_015718542.3 → XP_015574028.1  peroxisomal membrane protein 2 isoform X2

      UniProtKB/TrEMBL
      B9RW43
      Conserved Domains (1) summary
      pfam04117
      Location:252 → 316
      Mpv17_PMP22; Mpv17 / PMP22 family

    3. XM_048377485.1 → XP_048233442.1  mpv17-like protein isoform X1

      UniProtKB/TrEMBL
      B9RW43

    4. XM_025157136.2 → XP_025012904.1  uncharacterized protein LOC8262110 isoform X5

      UniProtKB/TrEMBL
      B9RW43

    5. XM_015718543.3 → XP_015574029.1  protein SYM1 isoform X3

      UniProtKB/TrEMBL
      B9RW43
      Conserved Domains (1) summary
      pfam04117
      Location:252 → 316
      Mpv17_PMP22; Mpv17 / PMP22 family
    Nucleotide Protein
    Heading Accession and Version

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