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    LOC8272272 probable beta-D-xylosidase 5 [ Ricinus communis (castor bean) ]

    Gene ID: 8272272, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC8272272
    Gene description
    probable beta-D-xylosidase 5
    Locus tag
    RCOM_0175560
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8272272 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 6 NC_063261.1 (19517791..19525763, complement)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994548.1 (261761..269627)

    Chromosome 6 - NC_063261.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerases II, IV and V subunit 12 Neighboring gene uncharacterized LOC8272276 Neighboring gene uncharacterized LOC112536198 Neighboring gene uncharacterized LOC8272271 Neighboring gene vacuolar-sorting receptor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-L-arabinofuranosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables xylan 1,4-beta-xylosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in arabinan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xylan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable beta-D-xylosidase 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063261.1 Reference ASM1957865v1

      Range
      19517791..19525763 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015724369.3 → XP_015579855.2  probable beta-D-xylosidase 5 isoform X3

      UniProtKB/TrEMBL
      B9SNE2

    2. XM_002527465.4 → XP_002527511.2  probable beta-D-xylosidase 5 isoform X1

      UniProtKB/TrEMBL
      B9SNE2

    3. XM_048376009.1 → XP_048231966.1  probable beta-D-xylosidase 5 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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