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    LOC8272270 vacuolar-sorting receptor 3 [ Ricinus communis (castor bean) ]

    Gene ID: 8272270, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8272270
    Gene description
    vacuolar-sorting receptor 3
    Locus tag
    RCOM_0175340
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8272270 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 6 NC_063261.1 (19536232..19545030)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994548.1 (242783..251569, complement)

    Chromosome 6 - NC_063261.1Genomic Context describing neighboring genes Neighboring gene probable beta-D-xylosidase 5 Neighboring gene uncharacterized LOC112536198 Neighboring gene uncharacterized LOC8272271 Neighboring gene transcription factor RSL2 Neighboring gene zinc finger protein-like 1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar-sorting receptor 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063261.1 Reference ASM1957865v1

      Range
      19536232..19545030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002527463.4 → XP_002527509.1  vacuolar-sorting receptor 3

      See identical proteins and their annotated locations for XP_002527509.1

      UniProtKB/TrEMBL
      B9SNE0
      Conserved Domains (3) summary
      smart00179
      Location:522 → 550
      EGF_CA; Calcium-binding EGF-like domain
      cd02125
      Location:56 → 183
      PA_VSR; PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most ...
      pfam12662
      Location:505 → 525
      cEGF; Complement Clr-like EGF-like
    Nucleotide Protein
    Heading Accession and Version

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